section of routines in basfix.i

functions in basfix.i -

 
 
 
baget


             baget(file, varname)  
 
     read and return the (first) variable named VARNAME in FILE.  
     The obasis function opens files read-only.  If you want to update  
     a PFB Basis-generated PDB file without altering its "@decorated"  
     variable names, open the file with updateb, then use baset to  
     modify variables.  Since you can only change the entire variable  
     with baset, you may want to read it first with baget.  
SEE ALSO: obasis,   baset  
 
 
 
baset


             baset, file, varname, value  
 
     set the (first) variable named VARNAME in FILE to VALUE.  
     The obasis function opens files read-only.  If you want to update  
     a PFB Basis-generated PDB file without altering its "@decorated"  
     variable names, open the file with updateb, then use baset to  
     modify variables.  Since you can only change the entire variable  
     with baset, you may want to read it first with baget.  
SEE ALSO: obasis,   baget  
 
 
 
basfix


             #include "basfix.i"  
 
     Provides functions obasis, baset, and baget to try to cope with  
     Basis PDB file conventions.  
     By default, the openb function is overloaded by the obasis  
     function.  The original openb is called basfix_openb.  It is  
     unclear what side effects this might have, but they are probably  
     minor.  If you want to preserve the original openb function, set  
          basfix= 1;  
     BEFORE you include basfix.i.  
SEE ALSO: obasis,   baset,   baget  
 
 
 
obasis


             file= obasis(filename)  
          or file= openb(filename)  
          or file= openb(filename, clogfile)  
 
     (If you typed help,openb and are reading this, then consider the  
      latter two forms.  If you typed help,obasis, consider the first.  
      In either case, the original openb function is called basfix_openb.)  
     open the existing file FILENAME for read-only binary I/O.  
     (Use updateb or createb, respectively, to open an existing file  
      with read-write access or to create a new file.)  
     If the CLOGFILE argument is supplied, it represents the structure  
     of FILENAME in the Clog binary data description language.  
     After an openb, the file variable may be used to extract variables  
     from the file as if it were a structure instance.  That is, the  
     expression "file.var" refers to the variable "var" in file "file".  
     A complete list of the variable names present in the file may  
     be obtained using the get_vars function.  If the file contains  
     history records, the jt and jc functions may be used to set the  
     current record -- initially, the first record is current.  
     The restore function may be used to make memory copies of data  
     in the file; this will be faster than a large number of  
     references to "file.var".  
SEE ALSO: updateb,   createb,   open,   cd,   show,   jt,   jc,  
restore,   get_vars,   get_times,   get_ncycs,  
get_member,   has_records,   set_blocksize,  
dump_clog,   read_clog,   recover_file,  
openb_hooks,   open102,   close102,   get_addrs,  
baset,   baget